1 | #!/usr/bin/env python |
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2 | # |
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3 | # This file is part of Jobmonarch |
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4 | # |
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5 | # Copyright (C) 2006-2007 Ramon Bastiaans |
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6 | # Copyright (C) 2007, 2009 Dave Love (SGE code) |
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7 | # |
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8 | # Jobmonarch is free software; you can redistribute it and/or modify |
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9 | # it under the terms of the GNU General Public License as published by |
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10 | # the Free Software Foundation; either version 2 of the License, or |
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11 | # (at your option) any later version. |
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12 | # |
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13 | # Jobmonarch is distributed in the hope that it will be useful, |
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14 | # but WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 | # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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16 | # GNU General Public License for more details. |
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17 | # |
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18 | # You should have received a copy of the GNU General Public License |
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19 | # along with this program; if not, write to the Free Software |
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20 | # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA |
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21 | # |
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22 | # SVN $Id: jobmond.py 622 2009-06-03 12:23:11Z davel $ |
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23 | # |
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24 | |
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25 | import sys, getopt, ConfigParser, time, os, socket, string, re |
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26 | import xdrlib, socket, syslog, xml, xml.sax |
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27 | from xml.sax.handler import feature_namespaces |
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28 | from collections import deque |
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29 | |
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30 | VERSION='0.3.1' |
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31 | |
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32 | def usage( ver ): |
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33 | |
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34 | print 'jobmond %s' %VERSION |
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35 | |
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36 | if ver: |
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37 | return 0 |
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38 | |
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39 | print |
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40 | print 'Purpose:' |
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41 | print ' The Job Monitoring Daemon (jobmond) reports batch jobs information and statistics' |
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42 | print ' to Ganglia, which can be viewed with Job Monarch web frontend' |
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43 | print |
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44 | print 'Usage: jobmond [OPTIONS]' |
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45 | print |
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46 | print ' -c, --config=FILE The configuration file to use (default: /etc/jobmond.conf)' |
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47 | print ' -p, --pidfile=FILE Use pid file to store the process id' |
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48 | print ' -h, --help Print help and exit' |
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49 | print ' -v, --version Print version and exit' |
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50 | print |
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51 | |
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52 | def processArgs( args ): |
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53 | |
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54 | SHORT_L = 'p:hvc:' |
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55 | LONG_L = [ 'help', 'config=', 'pidfile=', 'version' ] |
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56 | |
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57 | global PIDFILE |
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58 | PIDFILE = None |
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59 | |
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60 | config_filename = '/etc/jobmond.conf' |
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61 | |
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62 | try: |
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63 | |
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64 | opts, args = getopt.getopt( args, SHORT_L, LONG_L ) |
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65 | |
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66 | except getopt.GetoptError, detail: |
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67 | |
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68 | print detail |
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69 | usage() |
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70 | sys.exit( 1 ) |
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71 | |
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72 | for opt, value in opts: |
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73 | |
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74 | if opt in [ '--config', '-c' ]: |
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75 | |
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76 | config_filename = value |
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77 | |
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78 | if opt in [ '--pidfile', '-p' ]: |
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79 | |
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80 | PIDFILE = value |
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81 | |
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82 | if opt in [ '--help', '-h' ]: |
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83 | |
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84 | usage( False ) |
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85 | sys.exit( 0 ) |
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86 | |
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87 | if opt in [ '--version', '-v' ]: |
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88 | |
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89 | usage( True ) |
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90 | sys.exit( 0 ) |
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91 | |
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92 | return loadConfig( config_filename ) |
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93 | |
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94 | # Fixme: This doesn't DTRT with commented-out bits of the file. E.g. |
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95 | # it picked up a commented-out `mcast_join' and tried to use a |
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96 | # multicast channel when it shouldn't have done. |
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97 | class GangliaConfigParser: |
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98 | |
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99 | def __init__( self, config_file ): |
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100 | |
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101 | self.config_file = config_file |
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102 | |
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103 | if not os.path.exists( self.config_file ): |
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104 | |
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105 | debug_msg( 0, "FATAL ERROR: gmond config '" + self.config_file + "' not found!" ) |
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106 | sys.exit( 1 ) |
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107 | |
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108 | def removeQuotes( self, value ): |
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109 | |
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110 | clean_value = value |
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111 | clean_value = clean_value.replace( "'", "" ) |
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112 | clean_value = clean_value.replace( '"', '' ) |
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113 | clean_value = clean_value.strip() |
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114 | |
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115 | return clean_value |
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116 | |
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117 | def getVal( self, section, valname ): |
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118 | |
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119 | cfg_fp = open( self.config_file ) |
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120 | section_start = False |
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121 | section_found = False |
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122 | value = None |
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123 | |
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124 | for line in cfg_fp.readlines(): |
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125 | |
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126 | if line.find( section ) != -1: |
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127 | |
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128 | section_found = True |
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129 | |
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130 | if line.find( '{' ) != -1 and section_found: |
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131 | |
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132 | section_start = True |
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133 | |
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134 | if line.find( '}' ) != -1 and section_found: |
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135 | |
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136 | section_start = False |
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137 | section_found = False |
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138 | |
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139 | if line.find( valname ) != -1 and section_start: |
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140 | |
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141 | value = string.join( line.split( '=' )[1:], '' ).strip() |
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142 | |
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143 | cfg_fp.close() |
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144 | |
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145 | return value |
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146 | |
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147 | def getInt( self, section, valname ): |
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148 | |
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149 | value = self.getVal( section, valname ) |
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150 | |
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151 | if not value: |
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152 | return False |
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153 | |
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154 | value = self.removeQuotes( value ) |
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155 | |
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156 | return int( value ) |
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157 | |
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158 | def getStr( self, section, valname ): |
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159 | |
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160 | value = self.getVal( section, valname ) |
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161 | |
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162 | if not value: |
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163 | return False |
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164 | |
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165 | value = self.removeQuotes( value ) |
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166 | |
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167 | return str( value ) |
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168 | |
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169 | def findGmetric(): |
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170 | |
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171 | for dir in os.path.expandvars( '$PATH' ).split( ':' ): |
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172 | |
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173 | guess = '%s/%s' %( dir, 'gmetric' ) |
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174 | |
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175 | if os.path.exists( guess ): |
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176 | |
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177 | return guess |
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178 | |
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179 | return False |
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180 | |
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181 | def loadConfig( filename ): |
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182 | |
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183 | def getlist( cfg_string ): |
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184 | |
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185 | my_list = [ ] |
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186 | |
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187 | for item_txt in cfg_string.split( ',' ): |
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188 | |
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189 | sep_char = None |
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190 | |
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191 | item_txt = item_txt.strip() |
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192 | |
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193 | for s_char in [ "'", '"' ]: |
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194 | |
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195 | if item_txt.find( s_char ) != -1: |
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196 | |
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197 | if item_txt.count( s_char ) != 2: |
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198 | |
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199 | print 'Missing quote: %s' %item_txt |
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200 | sys.exit( 1 ) |
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201 | |
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202 | else: |
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203 | |
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204 | sep_char = s_char |
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205 | break |
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206 | |
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207 | if sep_char: |
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208 | |
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209 | item_txt = item_txt.split( sep_char )[1] |
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210 | |
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211 | my_list.append( item_txt ) |
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212 | |
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213 | return my_list |
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214 | |
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215 | cfg = ConfigParser.ConfigParser() |
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216 | |
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217 | cfg.read( filename ) |
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218 | |
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219 | global DEBUG_LEVEL, DAEMONIZE, BATCH_SERVER, BATCH_POLL_INTERVAL |
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220 | global GMOND_CONF, DETECT_TIME_DIFFS, BATCH_HOST_TRANSLATE |
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221 | global BATCH_API, QUEUE, GMETRIC_TARGET, USE_SYSLOG |
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222 | global SYSLOG_LEVEL, SYSLOG_FACILITY, GMETRIC_BINARY |
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223 | |
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224 | DEBUG_LEVEL = cfg.getint( 'DEFAULT', 'DEBUG_LEVEL' ) |
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225 | |
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226 | DAEMONIZE = cfg.getboolean( 'DEFAULT', 'DAEMONIZE' ) |
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227 | |
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228 | SYSLOG_LEVEL = -1 |
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229 | SYSLOG_FACILITY = None |
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230 | |
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231 | try: |
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232 | USE_SYSLOG = cfg.getboolean( 'DEFAULT', 'USE_SYSLOG' ) |
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233 | |
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234 | except ConfigParser.NoOptionError: |
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235 | |
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236 | USE_SYSLOG = True |
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237 | |
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238 | debug_msg( 0, 'ERROR: no option USE_SYSLOG found: assuming yes' ) |
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239 | |
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240 | if USE_SYSLOG: |
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241 | |
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242 | try: |
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243 | SYSLOG_LEVEL = cfg.getint( 'DEFAULT', 'SYSLOG_LEVEL' ) |
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244 | |
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245 | except ConfigParser.NoOptionError: |
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246 | |
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247 | debug_msg( 0, 'ERROR: no option SYSLOG_LEVEL found: assuming level 0' ) |
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248 | SYSLOG_LEVEL = 0 |
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249 | |
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250 | try: |
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251 | |
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252 | SYSLOG_FACILITY = eval( 'syslog.LOG_' + cfg.get( 'DEFAULT', 'SYSLOG_FACILITY' ) ) |
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253 | |
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254 | except ConfigParser.NoOptionError: |
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255 | |
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256 | SYSLOG_FACILITY = syslog.LOG_DAEMON |
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257 | |
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258 | debug_msg( 0, 'ERROR: no option SYSLOG_FACILITY found: assuming facility DAEMON' ) |
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259 | |
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260 | try: |
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261 | |
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262 | BATCH_SERVER = cfg.get( 'DEFAULT', 'BATCH_SERVER' ) |
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263 | |
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264 | except ConfigParser.NoOptionError: |
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265 | |
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266 | # Backwards compatibility for old configs |
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267 | # |
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268 | |
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269 | BATCH_SERVER = cfg.get( 'DEFAULT', 'TORQUE_SERVER' ) |
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270 | api_guess = 'pbs' |
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271 | |
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272 | try: |
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273 | |
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274 | BATCH_POLL_INTERVAL = cfg.getint( 'DEFAULT', 'BATCH_POLL_INTERVAL' ) |
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275 | |
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276 | except ConfigParser.NoOptionError: |
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277 | |
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278 | # Backwards compatibility for old configs |
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279 | # |
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280 | |
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281 | BATCH_POLL_INTERVAL = cfg.getint( 'DEFAULT', 'TORQUE_POLL_INTERVAL' ) |
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282 | api_guess = 'pbs' |
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283 | |
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284 | try: |
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285 | |
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286 | GMOND_CONF = cfg.get( 'DEFAULT', 'GMOND_CONF' ) |
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287 | |
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288 | except ConfigParser.NoOptionError: |
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289 | |
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290 | # Not specified: assume /etc/gmond.conf |
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291 | # |
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292 | GMOND_CONF = '/etc/gmond.conf' |
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293 | |
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294 | ganglia_cfg = GangliaConfigParser( GMOND_CONF ) |
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295 | |
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296 | # Let's try to find the GMETRIC_TARGET ourselves first from GMOND_CONF |
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297 | # |
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298 | gmetric_dest_ip = ganglia_cfg.getStr( 'udp_send_channel', 'mcast_join' ) |
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299 | |
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300 | if not gmetric_dest_ip: |
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301 | |
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302 | # Maybe unicast target then |
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303 | # |
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304 | gmetric_dest_ip = ganglia_cfg.getStr( 'udp_send_channel', 'host' ) |
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305 | |
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306 | gmetric_dest_port = ganglia_cfg.getStr( 'udp_send_channel', 'port' ) |
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307 | |
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308 | if gmetric_dest_ip and gmetric_dest_port: |
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309 | |
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310 | GMETRIC_TARGET = '%s:%s' %( gmetric_dest_ip, gmetric_dest_port ) |
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311 | else: |
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312 | |
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313 | debug_msg( 0, "WARNING: Can't parse udp_send_channel from: '%s'" %GMOND_CONF ) |
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314 | |
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315 | # Couldn't figure it out: let's see if it's in our jobmond.conf |
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316 | # |
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317 | try: |
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318 | |
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319 | GMETRIC_TARGET = cfg.get( 'DEFAULT', 'GMETRIC_TARGET' ) |
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320 | |
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321 | # Guess not: now just give up |
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322 | # |
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323 | except ConfigParser.NoOptionError: |
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324 | |
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325 | GMETRIC_TARGET = None |
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326 | |
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327 | debug_msg( 0, "ERROR: GMETRIC_TARGET not set: internal Gmetric handling aborted. Failing back to DEPRECATED use of gmond.conf/gmetric binary. This will slow down jobmond significantly!" ) |
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328 | |
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329 | gmetric_bin = findGmetric() |
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330 | |
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331 | if gmetric_bin: |
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332 | |
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333 | GMETRIC_BINARY = gmetric_bin |
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334 | else: |
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335 | debug_msg( 0, "WARNING: Can't find gmetric binary anywhere in $PATH" ) |
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336 | |
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337 | try: |
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338 | |
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339 | GMETRIC_BINARY = cfg.get( 'DEFAULT', 'GMETRIC_BINARY' ) |
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340 | |
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341 | except ConfigParser.NoOptionError: |
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342 | |
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343 | debug_msg( 0, "FATAL ERROR: GMETRIC_BINARY not set and not in $PATH" ) |
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344 | sys.exit( 1 ) |
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345 | |
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346 | DETECT_TIME_DIFFS = cfg.getboolean( 'DEFAULT', 'DETECT_TIME_DIFFS' ) |
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347 | |
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348 | BATCH_HOST_TRANSLATE = getlist( cfg.get( 'DEFAULT', 'BATCH_HOST_TRANSLATE' ) ) |
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349 | |
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350 | try: |
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351 | |
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352 | BATCH_API = cfg.get( 'DEFAULT', 'BATCH_API' ) |
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353 | |
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354 | except ConfigParser.NoOptionError, detail: |
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355 | |
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356 | if BATCH_SERVER and api_guess: |
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357 | |
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358 | BATCH_API = api_guess |
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359 | else: |
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360 | debug_msg( 0, "FATAL ERROR: BATCH_API not set and can't make guess" ) |
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361 | sys.exit( 1 ) |
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362 | |
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363 | try: |
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364 | |
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365 | QUEUE = getlist( cfg.get( 'DEFAULT', 'QUEUE' ) ) |
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366 | |
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367 | except ConfigParser.NoOptionError, detail: |
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368 | |
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369 | QUEUE = None |
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370 | |
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371 | return True |
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372 | |
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373 | def fqdn_parts (fqdn): |
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374 | |
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375 | """Return pair of host and domain for fully-qualified domain name arg.""" |
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376 | |
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377 | parts = fqdn.split (".") |
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378 | |
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379 | return (parts[0], string.join(parts[1:], ".")) |
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380 | |
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381 | METRIC_MAX_VAL_LEN = 900 |
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382 | |
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383 | class DataProcessor: |
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384 | |
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385 | """Class for processing of data""" |
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386 | |
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387 | binary = None |
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388 | |
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389 | def __init__( self, binary=None ): |
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390 | |
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391 | """Remember alternate binary location if supplied""" |
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392 | |
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393 | global GMETRIC_BINARY |
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394 | |
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395 | if binary: |
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396 | self.binary = binary |
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397 | |
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398 | if not self.binary: |
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399 | self.binary = GMETRIC_BINARY |
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400 | |
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401 | # Timeout for XML |
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402 | # |
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403 | # From ganglia's documentation: |
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404 | # |
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405 | # 'A metric will be deleted DMAX seconds after it is received, and |
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406 | # DMAX=0 means eternal life.' |
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407 | |
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408 | self.dmax = str( int( int( BATCH_POLL_INTERVAL ) * 2 ) ) |
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409 | |
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410 | if GMOND_CONF: |
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411 | |
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412 | incompatible = self.checkGmetricVersion() |
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413 | |
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414 | if incompatible: |
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415 | |
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416 | debug_msg( 0, 'Gmetric version not compatible, please upgrade to at least 3.0.1' ) |
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417 | sys.exit( 1 ) |
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418 | |
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419 | def checkGmetricVersion( self ): |
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420 | |
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421 | """ |
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422 | Check version of gmetric is at least 3.0.1 |
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423 | for the syntax we use |
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424 | """ |
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425 | |
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426 | global METRIC_MAX_VAL_LEN |
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427 | |
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428 | incompatible = 0 |
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429 | |
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430 | gfp = os.popen( self.binary + ' --version' ) |
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431 | lines = gfp.readlines() |
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432 | |
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433 | gfp.close() |
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434 | |
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435 | for line in lines: |
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436 | |
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437 | line = line.split( ' ' ) |
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438 | |
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439 | if len( line ) == 2 and str( line ).find( 'gmetric' ) != -1: |
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440 | |
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441 | gmetric_version = line[1].split( '\n' )[0] |
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442 | |
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443 | version_major = int( gmetric_version.split( '.' )[0] ) |
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444 | version_minor = int( gmetric_version.split( '.' )[1] ) |
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445 | version_patch = int( gmetric_version.split( '.' )[2] ) |
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446 | |
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447 | incompatible = 0 |
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448 | |
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449 | if version_major < 3: |
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450 | |
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451 | incompatible = 1 |
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452 | |
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453 | elif version_major == 3: |
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454 | |
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455 | if version_minor == 0: |
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456 | |
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457 | if version_patch < 1: |
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458 | |
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459 | incompatible = 1 |
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460 | |
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461 | # Gmetric 3.0.1 >< 3.0.3 had a bug in the max metric length |
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462 | # |
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463 | if version_patch < 3: |
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464 | |
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465 | METRIC_MAX_VAL_LEN = 900 |
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466 | |
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467 | elif version_patch >= 3: |
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468 | |
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469 | METRIC_MAX_VAL_LEN = 1400 |
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470 | |
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471 | return incompatible |
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472 | |
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473 | def multicastGmetric( self, metricname, metricval, valtype='string', units='' ): |
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474 | |
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475 | """Call gmetric binary and multicast""" |
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476 | |
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477 | cmd = self.binary |
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478 | |
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479 | if GMETRIC_TARGET: |
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480 | |
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481 | GMETRIC_TARGET_HOST = GMETRIC_TARGET.split( ':' )[0] |
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482 | GMETRIC_TARGET_PORT = GMETRIC_TARGET.split( ':' )[1] |
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483 | |
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484 | metric_debug = "[gmetric] name: %s - val: %s - dmax: %s" %( str( metricname ), str( metricval ), str( self.dmax ) ) |
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485 | |
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486 | debug_msg( 10, printTime() + ' ' + metric_debug) |
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487 | |
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488 | gm = Gmetric( GMETRIC_TARGET_HOST, GMETRIC_TARGET_PORT ) |
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489 | |
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490 | gm.send( str( metricname ), str( metricval ), str( self.dmax ), valtype, units ) |
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491 | |
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492 | else: |
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493 | try: |
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494 | cmd = cmd + ' -c' + GMOND_CONF |
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495 | |
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496 | except NameError: |
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497 | |
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498 | debug_msg( 10, 'Assuming /etc/gmond.conf for gmetric cmd (omitting)' ) |
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499 | |
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500 | cmd = cmd + ' -n' + str( metricname )+ ' -v"' + str( metricval )+ '" -t' + str( valtype ) + ' -d' + str( self.dmax ) |
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501 | |
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502 | if len( units ) > 0: |
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503 | |
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504 | cmd = cmd + ' -u"' + units + '"' |
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505 | |
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506 | debug_msg( 10, printTime() + ' ' + cmd ) |
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507 | |
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508 | os.system( cmd ) |
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509 | |
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510 | class DataGatherer: |
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511 | |
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512 | """Skeleton class for batch system DataGatherer""" |
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513 | |
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514 | def printJobs( self, jobs ): |
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515 | |
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516 | """Print a jobinfo overview""" |
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517 | |
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518 | for name, attrs in self.jobs.items(): |
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519 | |
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520 | print 'job %s' %(name) |
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521 | |
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522 | for name, val in attrs.items(): |
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523 | |
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524 | print '\t%s = %s' %( name, val ) |
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525 | |
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526 | def printJob( self, jobs, job_id ): |
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527 | |
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528 | """Print job with job_id from jobs""" |
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529 | |
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530 | print 'job %s' %(job_id) |
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531 | |
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532 | for name, val in jobs[ job_id ].items(): |
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533 | |
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534 | print '\t%s = %s' %( name, val ) |
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535 | |
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536 | def getAttr( self, attrs, name ): |
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537 | |
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538 | """Return certain attribute from dictionary, if exists""" |
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539 | |
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540 | if attrs.has_key( name ): |
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541 | |
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542 | return attrs[ name ] |
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543 | else: |
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544 | return '' |
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545 | |
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546 | def jobDataChanged( self, jobs, job_id, attrs ): |
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547 | |
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548 | """Check if job with attrs and job_id in jobs has changed""" |
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549 | |
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550 | if jobs.has_key( job_id ): |
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551 | |
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552 | oldData = jobs[ job_id ] |
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553 | else: |
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554 | return 1 |
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555 | |
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556 | for name, val in attrs.items(): |
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557 | |
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558 | if oldData.has_key( name ): |
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559 | |
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560 | if oldData[ name ] != attrs[ name ]: |
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561 | |
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562 | return 1 |
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563 | |
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564 | else: |
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565 | return 1 |
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566 | |
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567 | return 0 |
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568 | |
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569 | def submitJobData( self ): |
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570 | |
---|
571 | """Submit job info list""" |
---|
572 | |
---|
573 | global BATCH_API |
---|
574 | |
---|
575 | self.dp.multicastGmetric( 'MONARCH-HEARTBEAT', str( int( int( self.cur_time ) + int( self.timeoffset ) ) ) ) |
---|
576 | |
---|
577 | running_jobs = 0 |
---|
578 | queued_jobs = 0 |
---|
579 | |
---|
580 | # Count how many running/queued jobs we found |
---|
581 | # |
---|
582 | for jobid, jobattrs in self.jobs.items(): |
---|
583 | |
---|
584 | if jobattrs[ 'status' ] == 'Q': |
---|
585 | |
---|
586 | queued_jobs += 1 |
---|
587 | |
---|
588 | elif jobattrs[ 'status' ] == 'R': |
---|
589 | |
---|
590 | running_jobs += 1 |
---|
591 | |
---|
592 | # Report running/queued jobs as seperate metric for a nice RRD graph |
---|
593 | # |
---|
594 | self.dp.multicastGmetric( 'MONARCH-RJ', str( running_jobs ), 'uint32', 'jobs' ) |
---|
595 | self.dp.multicastGmetric( 'MONARCH-QJ', str( queued_jobs ), 'uint32', 'jobs' ) |
---|
596 | |
---|
597 | # Report down/offline nodes in batch (PBS only ATM) |
---|
598 | # |
---|
599 | if BATCH_API == 'pbs': |
---|
600 | |
---|
601 | domain = fqdn_parts( socket.getfqdn() )[1] |
---|
602 | |
---|
603 | downed_nodes = list() |
---|
604 | offline_nodes = list() |
---|
605 | |
---|
606 | l = ['state'] |
---|
607 | |
---|
608 | for name, node in self.pq.getnodes().items(): |
---|
609 | |
---|
610 | if ( node[ 'state' ].find( "down" ) != -1 ): |
---|
611 | |
---|
612 | downed_nodes.append( name ) |
---|
613 | |
---|
614 | if ( node[ 'state' ].find( "offline" ) != -1 ): |
---|
615 | |
---|
616 | offline_nodes.append( name ) |
---|
617 | |
---|
618 | downnodeslist = do_nodelist( downed_nodes ) |
---|
619 | offlinenodeslist = do_nodelist( offline_nodes ) |
---|
620 | |
---|
621 | down_str = 'nodes=%s domain=%s reported=%s' %( string.join( downnodeslist, ';' ), domain, str( int( int( self.cur_time ) + int( self.timeoffset ) ) ) ) |
---|
622 | offl_str = 'nodes=%s domain=%s reported=%s' %( string.join( offlinenodeslist, ';' ), domain, str( int( int( self.cur_time ) + int( self.timeoffset ) ) ) ) |
---|
623 | self.dp.multicastGmetric( 'MONARCH-DOWN' , down_str ) |
---|
624 | self.dp.multicastGmetric( 'MONARCH-OFFLINE', offl_str ) |
---|
625 | |
---|
626 | # Now let's spread the knowledge |
---|
627 | # |
---|
628 | for jobid, jobattrs in self.jobs.items(): |
---|
629 | |
---|
630 | # Make gmetric values for each job: respect max gmetric value length |
---|
631 | # |
---|
632 | gmetric_val = self.compileGmetricVal( jobid, jobattrs ) |
---|
633 | metric_increment = 0 |
---|
634 | |
---|
635 | # If we have more job info than max gmetric value length allows, split it up |
---|
636 | # amongst multiple metrics |
---|
637 | # |
---|
638 | for val in gmetric_val: |
---|
639 | |
---|
640 | self.dp.multicastGmetric( 'MONARCH-JOB-' + jobid + '-' + str(metric_increment), val ) |
---|
641 | |
---|
642 | # Increase follow number if this jobinfo is split up amongst more than 1 gmetric |
---|
643 | # |
---|
644 | metric_increment = metric_increment + 1 |
---|
645 | |
---|
646 | def compileGmetricVal( self, jobid, jobattrs ): |
---|
647 | |
---|
648 | """Create a val string for gmetric of jobinfo""" |
---|
649 | |
---|
650 | gval_lists = [ ] |
---|
651 | val_list = { } |
---|
652 | |
---|
653 | for val_name, val_value in jobattrs.items(): |
---|
654 | |
---|
655 | # These are our own metric names, i.e.: status, start_timestamp, etc |
---|
656 | # |
---|
657 | val_list_names_len = len( string.join( val_list.keys() ) ) + len(val_list.keys()) |
---|
658 | |
---|
659 | # These are their corresponding values |
---|
660 | # |
---|
661 | val_list_vals_len = len( string.join( val_list.values() ) ) + len(val_list.values()) |
---|
662 | |
---|
663 | if val_name == 'nodes' and jobattrs['status'] == 'R': |
---|
664 | |
---|
665 | node_str = None |
---|
666 | |
---|
667 | for node in val_value: |
---|
668 | |
---|
669 | if node_str: |
---|
670 | |
---|
671 | node_str = node_str + ';' + node |
---|
672 | else: |
---|
673 | node_str = node |
---|
674 | |
---|
675 | # Make sure if we add this new info, that the total metric's value length does not exceed METRIC_MAX_VAL_LEN |
---|
676 | # |
---|
677 | if (val_list_names_len + len(val_name) ) + (val_list_vals_len + len(node_str) ) > METRIC_MAX_VAL_LEN: |
---|
678 | |
---|
679 | # It's too big, we need to make a new gmetric for the additional info |
---|
680 | # |
---|
681 | val_list[ val_name ] = node_str |
---|
682 | |
---|
683 | gval_lists.append( val_list ) |
---|
684 | |
---|
685 | val_list = { } |
---|
686 | node_str = None |
---|
687 | |
---|
688 | val_list[ val_name ] = node_str |
---|
689 | |
---|
690 | gval_lists.append( val_list ) |
---|
691 | |
---|
692 | val_list = { } |
---|
693 | |
---|
694 | elif val_value != '': |
---|
695 | |
---|
696 | # Make sure if we add this new info, that the total metric's value length does not exceed METRIC_MAX_VAL_LEN |
---|
697 | # |
---|
698 | if (val_list_names_len + len(val_name) ) + (val_list_vals_len + len(str(val_value)) ) > METRIC_MAX_VAL_LEN: |
---|
699 | |
---|
700 | # It's too big, we need to make a new gmetric for the additional info |
---|
701 | # |
---|
702 | gval_lists.append( val_list ) |
---|
703 | |
---|
704 | val_list = { } |
---|
705 | |
---|
706 | val_list[ val_name ] = val_value |
---|
707 | |
---|
708 | if len( val_list ) > 0: |
---|
709 | |
---|
710 | gval_lists.append( val_list ) |
---|
711 | |
---|
712 | str_list = [ ] |
---|
713 | |
---|
714 | # Now append the value names and values together, i.e.: stop_timestamp=value, etc |
---|
715 | # |
---|
716 | for val_list in gval_lists: |
---|
717 | |
---|
718 | my_val_str = None |
---|
719 | |
---|
720 | for val_name, val_value in val_list.items(): |
---|
721 | |
---|
722 | if type(val_value) == list: |
---|
723 | |
---|
724 | val_value = val_value.join( ',' ) |
---|
725 | |
---|
726 | if my_val_str: |
---|
727 | |
---|
728 | try: |
---|
729 | # fixme: It's getting |
---|
730 | # ('nodes', None) items |
---|
731 | my_val_str = my_val_str + ' ' + val_name + '=' + val_value |
---|
732 | except: |
---|
733 | pass |
---|
734 | |
---|
735 | else: |
---|
736 | my_val_str = val_name + '=' + val_value |
---|
737 | |
---|
738 | str_list.append( my_val_str ) |
---|
739 | |
---|
740 | return str_list |
---|
741 | |
---|
742 | def daemon( self ): |
---|
743 | |
---|
744 | """Run as daemon forever""" |
---|
745 | |
---|
746 | # Fork the first child |
---|
747 | # |
---|
748 | pid = os.fork() |
---|
749 | if pid > 0: |
---|
750 | sys.exit(0) # end parent |
---|
751 | |
---|
752 | # creates a session and sets the process group ID |
---|
753 | # |
---|
754 | os.setsid() |
---|
755 | |
---|
756 | # Fork the second child |
---|
757 | # |
---|
758 | pid = os.fork() |
---|
759 | if pid > 0: |
---|
760 | sys.exit(0) # end parent |
---|
761 | |
---|
762 | write_pidfile() |
---|
763 | |
---|
764 | # Go to the root directory and set the umask |
---|
765 | # |
---|
766 | os.chdir('/') |
---|
767 | os.umask(0) |
---|
768 | |
---|
769 | sys.stdin.close() |
---|
770 | sys.stdout.close() |
---|
771 | sys.stderr.close() |
---|
772 | |
---|
773 | os.open('/dev/null', os.O_RDWR) |
---|
774 | os.dup2(0, 1) |
---|
775 | os.dup2(0, 2) |
---|
776 | |
---|
777 | self.run() |
---|
778 | |
---|
779 | def run( self ): |
---|
780 | |
---|
781 | """Main thread""" |
---|
782 | |
---|
783 | while ( 1 ): |
---|
784 | |
---|
785 | self.getJobData() |
---|
786 | self.submitJobData() |
---|
787 | time.sleep( BATCH_POLL_INTERVAL ) |
---|
788 | |
---|
789 | # SGE code by Dave Love <fx@gnu.org>. Tested with SGE 6.0u8 and 6.0u11. May |
---|
790 | # work with SGE 6.1 (else should be easily fixable), but definitely doesn't |
---|
791 | # with 6.2. See also the fixmes. |
---|
792 | |
---|
793 | class NoJobs (Exception): |
---|
794 | """Exception raised by empty job list in qstat output.""" |
---|
795 | pass |
---|
796 | |
---|
797 | class SgeQstatXMLParser(xml.sax.handler.ContentHandler): |
---|
798 | """SAX handler for XML output from Sun Grid Engine's `qstat'.""" |
---|
799 | |
---|
800 | def __init__(self): |
---|
801 | self.value = "" |
---|
802 | self.joblist = [] |
---|
803 | self.job = {} |
---|
804 | self.queue = "" |
---|
805 | self.in_joblist = False |
---|
806 | self.lrequest = False |
---|
807 | self.eltq = deque() |
---|
808 | xml.sax.handler.ContentHandler.__init__(self) |
---|
809 | |
---|
810 | # The structure of the output is as follows (for SGE 6.0). It's |
---|
811 | # similar for 6.1, but radically different for 6.2, and is |
---|
812 | # undocumented generally. Unfortunately it's voluminous, and probably |
---|
813 | # doesn't scale to large clusters/queues. |
---|
814 | |
---|
815 | # <detailed_job_info xmlns:xsd="http://www.w3.org/2001/XMLSchema"> |
---|
816 | # <djob_info> |
---|
817 | # <qmaster_response> <!-- job --> |
---|
818 | # ... |
---|
819 | # <JB_ja_template> |
---|
820 | # <ulong_sublist> |
---|
821 | # ... <!-- start_time, state ... --> |
---|
822 | # </ulong_sublist> |
---|
823 | # </JB_ja_template> |
---|
824 | # <JB_ja_tasks> |
---|
825 | # <ulong_sublist> |
---|
826 | # ... <!-- task info |
---|
827 | # </ulong_sublist> |
---|
828 | # ... |
---|
829 | # </JB_ja_tasks> |
---|
830 | # ... |
---|
831 | # </qmaster_response> |
---|
832 | # </djob_info> |
---|
833 | # <messages> |
---|
834 | # ... |
---|
835 | |
---|
836 | # NB. We might treat each task as a separate job, like |
---|
837 | # straight qstat output, but the web interface expects jobs to |
---|
838 | # be identified by integers, not, say, <job number>.<task>. |
---|
839 | |
---|
840 | # So, I lied. If the job list is empty, we get invalid XML |
---|
841 | # like this, which we need to defend against: |
---|
842 | |
---|
843 | # <unknown_jobs xmlns:xsd="http://www.w3.org/2001/XMLSchema"> |
---|
844 | # <> |
---|
845 | # <ST_name>*</ST_name> |
---|
846 | # </> |
---|
847 | # </unknown_jobs> |
---|
848 | |
---|
849 | def startElement(self, name, attrs): |
---|
850 | self.value = "" |
---|
851 | if name == "djob_info": # job list |
---|
852 | self.in_joblist = True |
---|
853 | # The job container is "qmaster_response" in SGE 6.0 |
---|
854 | # and 6.1, but "element" in 6.2. This is only the very |
---|
855 | # start of what's necessary for 6.2, though (sigh). |
---|
856 | elif (name == "qmaster_response" or name == "element") \ |
---|
857 | and self.eltq[-1] == "djob_info": # job |
---|
858 | self.job = {"job_state": "U", "slots": 0, |
---|
859 | "nodes": [], "queued_timestamp": "", |
---|
860 | "queued_timestamp": "", "queue": "", |
---|
861 | "ppn": "0", "RN_max": 0, |
---|
862 | # fixme in endElement |
---|
863 | "requested_memory": 0, "requested_time": 0 |
---|
864 | } |
---|
865 | self.joblist.append(self.job) |
---|
866 | elif name == "qstat_l_requests": # resource request |
---|
867 | self.lrequest = True |
---|
868 | elif name == "unknown_jobs": |
---|
869 | raise NoJobs |
---|
870 | self.eltq.append (name) |
---|
871 | |
---|
872 | def characters(self, ch): |
---|
873 | self.value += ch |
---|
874 | |
---|
875 | def endElement(self, name): |
---|
876 | """Snarf job elements contents into job dictionary. |
---|
877 | Translate keys if appropriate.""" |
---|
878 | |
---|
879 | name_trans = { |
---|
880 | "JB_job_number": "number", |
---|
881 | "JB_job_name": "name", "JB_owner": "owner", |
---|
882 | "queue_name": "queue", "JAT_start_time": "start_timestamp", |
---|
883 | "JB_submission_time": "queued_timestamp" |
---|
884 | } |
---|
885 | value = self.value |
---|
886 | self.eltq.pop () |
---|
887 | |
---|
888 | if name == "djob_info": |
---|
889 | self.in_joblist = False |
---|
890 | self.job = {} |
---|
891 | elif name == "JAT_master_queue": |
---|
892 | self.job["queue"] = value.split("@")[0] |
---|
893 | elif name == "JG_qhostname": |
---|
894 | if not (value in self.job["nodes"]): |
---|
895 | self.job["nodes"].append(value) |
---|
896 | elif name == "JG_slots": # slots in use |
---|
897 | self.job["slots"] += int(value) |
---|
898 | elif name == "RN_max": # requested slots (tasks or parallel) |
---|
899 | self.job["RN_max"] = max (self.job["RN_max"], |
---|
900 | int(value)) |
---|
901 | elif name == "JAT_state": # job state (bitwise or) |
---|
902 | value = int (value) |
---|
903 | # Status values from sge_jobL.h |
---|
904 | #define JIDLE 0x00000000 |
---|
905 | #define JHELD 0x00000010 |
---|
906 | #define JMIGRATING 0x00000020 |
---|
907 | #define JQUEUED 0x00000040 |
---|
908 | #define JRUNNING 0x00000080 |
---|
909 | #define JSUSPENDED 0x00000100 |
---|
910 | #define JTRANSFERING 0x00000200 |
---|
911 | #define JDELETED 0x00000400 |
---|
912 | #define JWAITING 0x00000800 |
---|
913 | #define JEXITING 0x00001000 |
---|
914 | #define JWRITTEN 0x00002000 |
---|
915 | #define JSUSPENDED_ON_THRESHOLD 0x00010000 |
---|
916 | #define JFINISHED 0x00010000 |
---|
917 | if value & 0x80: |
---|
918 | self.job["status"] = "R" |
---|
919 | elif value & 0x40: |
---|
920 | self.job["status"] = "Q" |
---|
921 | else: |
---|
922 | self.job["status"] = "O" # `other' |
---|
923 | elif name == "CE_name" and self.lrequest and self.value in \ |
---|
924 | ("h_cpu", "s_cpu", "cpu", "h_core", "s_core"): |
---|
925 | # We're in a container for an interesting resource |
---|
926 | # request; record which type. |
---|
927 | self.lrequest = self.value |
---|
928 | elif name == "CE_doubleval" and self.lrequest: |
---|
929 | # if we're in a container for an interesting |
---|
930 | # resource request, use the maxmimum of the hard |
---|
931 | # and soft requests to record the requested CPU |
---|
932 | # or core. Fixme: I'm not sure if this logic is |
---|
933 | # right. |
---|
934 | if self.lrequest in ("h_core", "s_core"): |
---|
935 | self.job["requested_memory"] = \ |
---|
936 | max (float (value), |
---|
937 | self.job["requested_memory"]) |
---|
938 | # Fixme: Check what cpu means, c.f [hs]_cpu. |
---|
939 | elif self.lrequest in ("h_cpu", "s_cpu", "cpu"): |
---|
940 | self.job["requested_time"] = \ |
---|
941 | max (float (value), |
---|
942 | self.job["requested_time"]) |
---|
943 | elif name == "qstat_l_requests": |
---|
944 | self.lrequest = False |
---|
945 | elif self.job and self.in_joblist: |
---|
946 | if name in name_trans: |
---|
947 | name = name_trans[name] |
---|
948 | self.job[name] = value |
---|
949 | |
---|
950 | # Abstracted from PBS original. |
---|
951 | # Fixme: Is it worth (or appropriate for PBS) sorting the result? |
---|
952 | # |
---|
953 | def do_nodelist( nodes ): |
---|
954 | |
---|
955 | """Translate node list as appropriate.""" |
---|
956 | |
---|
957 | nodeslist = [ ] |
---|
958 | my_domain = fqdn_parts( socket.getfqdn() )[1] |
---|
959 | |
---|
960 | for node in nodes: |
---|
961 | |
---|
962 | host = node.split( '/' )[0] # not relevant for SGE |
---|
963 | h, host_domain = fqdn_parts(host) |
---|
964 | |
---|
965 | if host_domain == my_domain: |
---|
966 | |
---|
967 | host = h |
---|
968 | |
---|
969 | if nodeslist.count( host ) == 0: |
---|
970 | |
---|
971 | for translate_pattern in BATCH_HOST_TRANSLATE: |
---|
972 | |
---|
973 | if translate_pattern.find( '/' ) != -1: |
---|
974 | |
---|
975 | translate_orig = \ |
---|
976 | translate_pattern.split( '/' )[1] |
---|
977 | translate_new = \ |
---|
978 | translate_pattern.split( '/' )[2] |
---|
979 | host = re.sub( translate_orig, |
---|
980 | translate_new, host ) |
---|
981 | if not host in nodeslist: |
---|
982 | nodeslist.append( host ) |
---|
983 | return nodeslist |
---|
984 | |
---|
985 | class SgeDataGatherer(DataGatherer): |
---|
986 | |
---|
987 | jobs = {} |
---|
988 | |
---|
989 | def __init__( self ): |
---|
990 | self.jobs = {} |
---|
991 | self.timeoffset = 0 |
---|
992 | self.dp = DataProcessor() |
---|
993 | |
---|
994 | def getJobData( self ): |
---|
995 | """Gather all data on current jobs in SGE""" |
---|
996 | |
---|
997 | import popen2 |
---|
998 | |
---|
999 | self.cur_time = 0 |
---|
1000 | queues = "" |
---|
1001 | if QUEUE: # only for specific queues |
---|
1002 | # Fixme: assumes queue names don't contain single |
---|
1003 | # quote or comma. Don't know what the SGE rules are. |
---|
1004 | queues = " -q '" + string.join (QUEUE, ",") + "'" |
---|
1005 | # Note the comment in SgeQstatXMLParser about scaling with |
---|
1006 | # this method of getting data. I haven't found better one. |
---|
1007 | # Output with args `-xml -ext -f -r' is easier to parse |
---|
1008 | # in some ways, harder in others, but it doesn't provide |
---|
1009 | # the submission time (at least SGE 6.0). The pipeline |
---|
1010 | # into sed corrects bogus XML observed with a configuration |
---|
1011 | # of SGE 6.0u8, which otherwise causes the parsing to hang. |
---|
1012 | piping = popen2.Popen3("qstat -u '*' -j '*' -xml | \ |
---|
1013 | sed -e 's/reported usage>/reported_usage>/g' -e 's;<\/*JATASK:.*>;;'" \ |
---|
1014 | + queues, True) |
---|
1015 | qstatparser = SgeQstatXMLParser() |
---|
1016 | parse_err = 0 |
---|
1017 | try: |
---|
1018 | xml.sax.parse(piping.fromchild, qstatparser) |
---|
1019 | except NoJobs: |
---|
1020 | pass |
---|
1021 | except: |
---|
1022 | parse_err = 1 |
---|
1023 | if piping.wait(): |
---|
1024 | debug_msg(10, |
---|
1025 | "qstat error, skipping until next polling interval: " |
---|
1026 | + piping.childerr.readline()) |
---|
1027 | return None |
---|
1028 | elif parse_err: |
---|
1029 | debug_msg(10, "Bad XML output from qstat"()) |
---|
1030 | exit (1) |
---|
1031 | for f in piping.fromchild, piping.tochild, piping.childerr: |
---|
1032 | f.close() |
---|
1033 | self.cur_time = time.time() |
---|
1034 | jobs_processed = [] |
---|
1035 | for job in qstatparser.joblist: |
---|
1036 | job_id = job["number"] |
---|
1037 | if job["status"] in [ 'Q', 'R' ]: |
---|
1038 | jobs_processed.append(job_id) |
---|
1039 | if job["status"] == "R": |
---|
1040 | job["nodes"] = do_nodelist (job["nodes"]) |
---|
1041 | # Fixme: why is job["nodes"] sometimes null? |
---|
1042 | try: |
---|
1043 | # Fixme: Is this sensible? The |
---|
1044 | # PBS-type PPN isn't something you use |
---|
1045 | # with SGE. |
---|
1046 | job["ppn"] = float(job["slots"]) / \ |
---|
1047 | len(job["nodes"]) |
---|
1048 | except: |
---|
1049 | job["ppn"] = 0 |
---|
1050 | if DETECT_TIME_DIFFS: |
---|
1051 | # If a job start is later than our |
---|
1052 | # current date, that must mean |
---|
1053 | # the SGE server's time is later |
---|
1054 | # than our local time. |
---|
1055 | start_timestamp = \ |
---|
1056 | int (job["start_timestamp"]) |
---|
1057 | if start_timestamp > \ |
---|
1058 | int(self.cur_time) + \ |
---|
1059 | int(self.timeoffset): |
---|
1060 | |
---|
1061 | self.timeoffset = \ |
---|
1062 | start_timestamp - \ |
---|
1063 | int(self.cur_time) |
---|
1064 | else: |
---|
1065 | # fixme: Note sure what this should be: |
---|
1066 | job["ppn"] = job["RN_max"] |
---|
1067 | job["nodes"] = "1" |
---|
1068 | |
---|
1069 | myAttrs = {} |
---|
1070 | for attr in ["name", "queue", "owner", |
---|
1071 | "requested_time", "status", |
---|
1072 | "requested_memory", "ppn", |
---|
1073 | "start_timestamp", "queued_timestamp"]: |
---|
1074 | myAttrs[attr] = str(job[attr]) |
---|
1075 | myAttrs["nodes"] = job["nodes"] |
---|
1076 | myAttrs["reported"] = str(int(self.cur_time) + \ |
---|
1077 | int(self.timeoffset)) |
---|
1078 | myAttrs["domain"] = fqdn_parts(socket.getfqdn())[1] |
---|
1079 | myAttrs["poll_interval"] = str(BATCH_POLL_INTERVAL) |
---|
1080 | |
---|
1081 | if self.jobDataChanged(self.jobs, job_id, myAttrs) \ |
---|
1082 | and myAttrs["status"] in ["R", "Q"]: |
---|
1083 | self.jobs[job_id] = myAttrs |
---|
1084 | for id, attrs in self.jobs.items(): |
---|
1085 | if id not in jobs_processed: |
---|
1086 | del self.jobs[id] |
---|
1087 | |
---|
1088 | # LSF code by Mahmoud Hanafi <hanafim@users.sourceforge.nt> |
---|
1089 | # Requres LSFObject http://sourceforge.net/projects/lsfobject |
---|
1090 | # |
---|
1091 | class LsfDataGatherer(DataGatherer): |
---|
1092 | |
---|
1093 | """This is the DataGatherer for LSf""" |
---|
1094 | |
---|
1095 | global lsfObject |
---|
1096 | |
---|
1097 | def __init__( self ): |
---|
1098 | |
---|
1099 | self.jobs = { } |
---|
1100 | self.timeoffset = 0 |
---|
1101 | self.dp = DataProcessor() |
---|
1102 | self.initLsfQuery() |
---|
1103 | |
---|
1104 | def _countDuplicatesInList( self, dupedList ): |
---|
1105 | |
---|
1106 | countDupes = { } |
---|
1107 | |
---|
1108 | for item in dupedList: |
---|
1109 | |
---|
1110 | if not countDupes.has_key( item ): |
---|
1111 | |
---|
1112 | countDupes[ item ] = 1 |
---|
1113 | else: |
---|
1114 | countDupes[ item ] = countDupes[ item ] + 1 |
---|
1115 | |
---|
1116 | dupeCountList = [ ] |
---|
1117 | |
---|
1118 | for item, count in countDupes.items(): |
---|
1119 | |
---|
1120 | dupeCountList.append( ( item, count ) ) |
---|
1121 | |
---|
1122 | return dupeCountList |
---|
1123 | # |
---|
1124 | #lst = ['I1','I2','I1','I3','I4','I4','I7','I7','I7','I7','I7'] |
---|
1125 | #print _countDuplicatesInList(lst) |
---|
1126 | #[('I1', 2), ('I3', 1), ('I2', 1), ('I4', 2), ('I7', 5)] |
---|
1127 | ######################## |
---|
1128 | |
---|
1129 | def initLsfQuery( self ): |
---|
1130 | self.pq = None |
---|
1131 | self.pq = lsfObject.jobInfoEntObject() |
---|
1132 | |
---|
1133 | def getJobData( self, known_jobs="" ): |
---|
1134 | """Gather all data on current jobs in LSF""" |
---|
1135 | if len( known_jobs ) > 0: |
---|
1136 | jobs = known_jobs |
---|
1137 | else: |
---|
1138 | jobs = { } |
---|
1139 | joblist = {} |
---|
1140 | joblist = self.pq.getJobInfo() |
---|
1141 | nodelist = '' |
---|
1142 | |
---|
1143 | self.cur_time = time.time() |
---|
1144 | |
---|
1145 | jobs_processed = [ ] |
---|
1146 | |
---|
1147 | for name, attrs in joblist.items(): |
---|
1148 | job_id = str(name) |
---|
1149 | jobs_processed.append( job_id ) |
---|
1150 | name = self.getAttr( attrs, 'jobName' ) |
---|
1151 | queue = self.getAttr( self.getAttr( attrs, 'submit') , 'queue' ) |
---|
1152 | owner = self.getAttr( attrs, 'user' ) |
---|
1153 | |
---|
1154 | ### THIS IS THE rLimit List index values |
---|
1155 | #define LSF_RLIMIT_CPU 0 /* cpu time in milliseconds */ |
---|
1156 | #define LSF_RLIMIT_FSIZE 1 /* maximum file size */ |
---|
1157 | #define LSF_RLIMIT_DATA 2 /* data size */ |
---|
1158 | #define LSF_RLIMIT_STACK 3 /* stack size */ |
---|
1159 | #define LSF_RLIMIT_CORE 4 /* core file size */ |
---|
1160 | #define LSF_RLIMIT_RSS 5 /* resident set size */ |
---|
1161 | #define LSF_RLIMIT_NOFILE 6 /* open files */ |
---|
1162 | #define LSF_RLIMIT_OPEN_MAX 7 /* (from HP-UX) */ |
---|
1163 | #define LSF_RLIMIT_VMEM 8 /* maximum swap mem */ |
---|
1164 | #define LSF_RLIMIT_SWAP 8 |
---|
1165 | #define LSF_RLIMIT_RUN 9 /* max wall-clock time limit */ |
---|
1166 | #define LSF_RLIMIT_PROCESS 10 /* process number limit */ |
---|
1167 | #define LSF_RLIMIT_THREAD 11 /* thread number limit (introduced in LSF6.0) */ |
---|
1168 | #define LSF_RLIM_NLIMITS 12 /* number of resource limits */ |
---|
1169 | |
---|
1170 | requested_time = self.getAttr( self.getAttr( attrs, 'submit') , 'rLimits' )[9] |
---|
1171 | if requested_time == -1: |
---|
1172 | requested_time = "" |
---|
1173 | requested_memory = self.getAttr( self.getAttr( attrs, 'submit') , 'rLimits' )[8] |
---|
1174 | if requested_memory == -1: |
---|
1175 | requested_memory = "" |
---|
1176 | # This tries to get proc per node. We don't support this right now |
---|
1177 | ppn = 0 #self.getAttr( self.getAttr( attrs, 'SubmitList') , 'numProessors' ) |
---|
1178 | requested_cpus = self.getAttr( self.getAttr( attrs, 'submit') , 'numProcessors' ) |
---|
1179 | if requested_cpus == None or requested_cpus == "": |
---|
1180 | requested_cpus = 1 |
---|
1181 | |
---|
1182 | if QUEUE: |
---|
1183 | for q in QUEUE: |
---|
1184 | if q == queue: |
---|
1185 | display_queue = 1 |
---|
1186 | break |
---|
1187 | else: |
---|
1188 | display_queue = 0 |
---|
1189 | continue |
---|
1190 | if display_queue == 0: |
---|
1191 | continue |
---|
1192 | |
---|
1193 | runState = self.getAttr( attrs, 'status' ) |
---|
1194 | if runState == 4: |
---|
1195 | status = 'R' |
---|
1196 | else: |
---|
1197 | status = 'Q' |
---|
1198 | queued_timestamp = self.getAttr( attrs, 'submitTime' ) |
---|
1199 | |
---|
1200 | if status == 'R': |
---|
1201 | start_timestamp = self.getAttr( attrs, 'startTime' ) |
---|
1202 | nodesCpu = dict(self._countDuplicatesInList(self.getAttr( attrs, 'exHosts' ))) |
---|
1203 | nodelist = nodesCpu.keys() |
---|
1204 | |
---|
1205 | if DETECT_TIME_DIFFS: |
---|
1206 | |
---|
1207 | # If a job start if later than our current date, |
---|
1208 | # that must mean the Torque server's time is later |
---|
1209 | # than our local time. |
---|
1210 | |
---|
1211 | if int(start_timestamp) > int( int(self.cur_time) + int(self.timeoffset) ): |
---|
1212 | |
---|
1213 | self.timeoffset = int( int(start_timestamp) - int(self.cur_time) ) |
---|
1214 | |
---|
1215 | elif status == 'Q': |
---|
1216 | start_timestamp = '' |
---|
1217 | count_mynodes = 0 |
---|
1218 | numeric_node = 1 |
---|
1219 | nodelist = '' |
---|
1220 | |
---|
1221 | myAttrs = { } |
---|
1222 | if name == "": |
---|
1223 | myAttrs['name'] = "none" |
---|
1224 | else: |
---|
1225 | myAttrs['name'] = name |
---|
1226 | |
---|
1227 | myAttrs[ 'owner' ] = owner |
---|
1228 | myAttrs[ 'requested_time' ] = str(requested_time) |
---|
1229 | myAttrs[ 'requested_memory' ] = str(requested_memory) |
---|
1230 | myAttrs[ 'requested_cpus' ] = str(requested_cpus) |
---|
1231 | myAttrs[ 'ppn' ] = str( ppn ) |
---|
1232 | myAttrs[ 'status' ] = status |
---|
1233 | myAttrs[ 'start_timestamp' ] = str(start_timestamp) |
---|
1234 | myAttrs[ 'queue' ] = str(queue) |
---|
1235 | myAttrs[ 'queued_timestamp' ] = str(queued_timestamp) |
---|
1236 | myAttrs[ 'reported' ] = str( int( int( self.cur_time ) + int( self.timeoffset ) ) ) |
---|
1237 | myAttrs[ 'nodes' ] = do_nodelist( nodelist ) |
---|
1238 | myAttrs[ 'domain' ] = fqdn_parts( socket.getfqdn() )[1] |
---|
1239 | myAttrs[ 'poll_interval' ] = str(BATCH_POLL_INTERVAL) |
---|
1240 | |
---|
1241 | if self.jobDataChanged( jobs, job_id, myAttrs ) and myAttrs['status'] in [ 'R', 'Q' ]: |
---|
1242 | jobs[ job_id ] = myAttrs |
---|
1243 | |
---|
1244 | debug_msg( 10, printTime() + ' job %s state changed' %(job_id) ) |
---|
1245 | |
---|
1246 | for id, attrs in jobs.items(): |
---|
1247 | if id not in jobs_processed: |
---|
1248 | # This one isn't there anymore |
---|
1249 | # |
---|
1250 | del jobs[ id ] |
---|
1251 | self.jobs=jobs |
---|
1252 | |
---|
1253 | |
---|
1254 | class PbsDataGatherer( DataGatherer ): |
---|
1255 | |
---|
1256 | """This is the DataGatherer for PBS and Torque""" |
---|
1257 | |
---|
1258 | global PBSQuery, PBSError |
---|
1259 | |
---|
1260 | def __init__( self ): |
---|
1261 | |
---|
1262 | """Setup appropriate variables""" |
---|
1263 | |
---|
1264 | self.jobs = { } |
---|
1265 | self.timeoffset = 0 |
---|
1266 | self.dp = DataProcessor() |
---|
1267 | |
---|
1268 | self.initPbsQuery() |
---|
1269 | |
---|
1270 | def initPbsQuery( self ): |
---|
1271 | |
---|
1272 | self.pq = None |
---|
1273 | |
---|
1274 | if( BATCH_SERVER ): |
---|
1275 | |
---|
1276 | self.pq = PBSQuery( BATCH_SERVER ) |
---|
1277 | else: |
---|
1278 | self.pq = PBSQuery() |
---|
1279 | |
---|
1280 | def getJobData( self ): |
---|
1281 | |
---|
1282 | """Gather all data on current jobs in Torque""" |
---|
1283 | |
---|
1284 | joblist = {} |
---|
1285 | self.cur_time = 0 |
---|
1286 | |
---|
1287 | try: |
---|
1288 | joblist = self.pq.getjobs() |
---|
1289 | self.cur_time = time.time() |
---|
1290 | |
---|
1291 | except PBSError, detail: |
---|
1292 | |
---|
1293 | debug_msg( 10, "Caught PBS unavailable, skipping until next polling interval: " + str( detail ) ) |
---|
1294 | return None |
---|
1295 | |
---|
1296 | jobs_processed = [ ] |
---|
1297 | |
---|
1298 | for name, attrs in joblist.items(): |
---|
1299 | display_queue = 1 |
---|
1300 | job_id = name.split( '.' )[0] |
---|
1301 | |
---|
1302 | name = self.getAttr( attrs, 'Job_Name' ) |
---|
1303 | queue = self.getAttr( attrs, 'queue' ) |
---|
1304 | |
---|
1305 | if QUEUE: |
---|
1306 | for q in QUEUE: |
---|
1307 | if q == queue: |
---|
1308 | display_queue = 1 |
---|
1309 | break |
---|
1310 | else: |
---|
1311 | display_queue = 0 |
---|
1312 | continue |
---|
1313 | if display_queue == 0: |
---|
1314 | continue |
---|
1315 | |
---|
1316 | |
---|
1317 | owner = self.getAttr( attrs, 'Job_Owner' ).split( '@' )[0] |
---|
1318 | requested_time = self.getAttr( attrs, 'Resource_List.walltime' ) |
---|
1319 | requested_memory = self.getAttr( attrs, 'Resource_List.mem' ) |
---|
1320 | |
---|
1321 | mynoderequest = self.getAttr( attrs, 'Resource_List.nodes' ) |
---|
1322 | |
---|
1323 | ppn = '' |
---|
1324 | |
---|
1325 | if mynoderequest.find( ':' ) != -1 and mynoderequest.find( 'ppn' ) != -1: |
---|
1326 | |
---|
1327 | mynoderequest_fields = mynoderequest.split( ':' ) |
---|
1328 | |
---|
1329 | for mynoderequest_field in mynoderequest_fields: |
---|
1330 | |
---|
1331 | if mynoderequest_field.find( 'ppn' ) != -1: |
---|
1332 | |
---|
1333 | ppn = mynoderequest_field.split( 'ppn=' )[1] |
---|
1334 | |
---|
1335 | status = self.getAttr( attrs, 'job_state' ) |
---|
1336 | |
---|
1337 | if status in [ 'Q', 'R' ]: |
---|
1338 | |
---|
1339 | jobs_processed.append( job_id ) |
---|
1340 | |
---|
1341 | queued_timestamp = self.getAttr( attrs, 'ctime' ) |
---|
1342 | |
---|
1343 | if status == 'R': |
---|
1344 | |
---|
1345 | start_timestamp = self.getAttr( attrs, 'mtime' ) |
---|
1346 | nodes = self.getAttr( attrs, 'exec_host' ).split( '+' ) |
---|
1347 | |
---|
1348 | nodeslist = do_nodelist( nodes ) |
---|
1349 | |
---|
1350 | if DETECT_TIME_DIFFS: |
---|
1351 | |
---|
1352 | # If a job start if later than our current date, |
---|
1353 | # that must mean the Torque server's time is later |
---|
1354 | # than our local time. |
---|
1355 | |
---|
1356 | if int( start_timestamp ) > int( int( self.cur_time ) + int( self.timeoffset ) ): |
---|
1357 | |
---|
1358 | self.timeoffset = int( int(start_timestamp) - int(self.cur_time) ) |
---|
1359 | |
---|
1360 | elif status == 'Q': |
---|
1361 | |
---|
1362 | # 'mynodequest' can be a string in the following syntax according to the |
---|
1363 | # Torque Administator's manual: |
---|
1364 | # |
---|
1365 | # {<node_count> | <hostname>}[:ppn=<ppn>][:<property>[:<property>]...][+ ...] |
---|
1366 | # {<node_count> | <hostname>}[:ppn=<ppn>][:<property>[:<property>]...][+ ...] |
---|
1367 | # etc |
---|
1368 | # |
---|
1369 | |
---|
1370 | # |
---|
1371 | # For now we only count the amount of nodes request and ignore properties |
---|
1372 | # |
---|
1373 | |
---|
1374 | start_timestamp = '' |
---|
1375 | count_mynodes = 0 |
---|
1376 | |
---|
1377 | for node in mynoderequest.split( '+' ): |
---|
1378 | |
---|
1379 | # Just grab the {node_count|hostname} part and ignore properties |
---|
1380 | # |
---|
1381 | nodepart = node.split( ':' )[0] |
---|
1382 | |
---|
1383 | # Let's assume a node_count value |
---|
1384 | # |
---|
1385 | numeric_node = 1 |
---|
1386 | |
---|
1387 | # Chop the value up into characters |
---|
1388 | # |
---|
1389 | for letter in nodepart: |
---|
1390 | |
---|
1391 | # If this char is not a digit (0-9), this must be a hostname |
---|
1392 | # |
---|
1393 | if letter not in string.digits: |
---|
1394 | |
---|
1395 | numeric_node = 0 |
---|
1396 | |
---|
1397 | # If this is a hostname, just count this as one (1) node |
---|
1398 | # |
---|
1399 | if not numeric_node: |
---|
1400 | |
---|
1401 | count_mynodes = count_mynodes + 1 |
---|
1402 | else: |
---|
1403 | |
---|
1404 | # If this a number, it must be the node_count |
---|
1405 | # and increase our count with it's value |
---|
1406 | # |
---|
1407 | try: |
---|
1408 | count_mynodes = count_mynodes + int( nodepart ) |
---|
1409 | |
---|
1410 | except ValueError, detail: |
---|
1411 | |
---|
1412 | # When we arrive here I must be bugged or very confused |
---|
1413 | # THIS SHOULD NOT HAPPEN! |
---|
1414 | # |
---|
1415 | debug_msg( 10, str( detail ) ) |
---|
1416 | debug_msg( 10, "Encountered weird node in Resources_List?!" ) |
---|
1417 | debug_msg( 10, 'nodepart = ' + str( nodepart ) ) |
---|
1418 | debug_msg( 10, 'job = ' + str( name ) ) |
---|
1419 | debug_msg( 10, 'attrs = ' + str( attrs ) ) |
---|
1420 | |
---|
1421 | nodeslist = str( count_mynodes ) |
---|
1422 | else: |
---|
1423 | start_timestamp = '' |
---|
1424 | nodeslist = '' |
---|
1425 | |
---|
1426 | myAttrs = { } |
---|
1427 | |
---|
1428 | myAttrs[ 'name' ] = str( name ) |
---|
1429 | myAttrs[ 'queue' ] = str( queue ) |
---|
1430 | myAttrs[ 'owner' ] = str( owner ) |
---|
1431 | myAttrs[ 'requested_time' ] = str( requested_time ) |
---|
1432 | myAttrs[ 'requested_memory' ] = str( requested_memory ) |
---|
1433 | myAttrs[ 'ppn' ] = str( ppn ) |
---|
1434 | myAttrs[ 'status' ] = str( status ) |
---|
1435 | myAttrs[ 'start_timestamp' ] = str( start_timestamp ) |
---|
1436 | myAttrs[ 'queued_timestamp' ] = str( queued_timestamp ) |
---|
1437 | myAttrs[ 'reported' ] = str( int( int( self.cur_time ) + int( self.timeoffset ) ) ) |
---|
1438 | myAttrs[ 'nodes' ] = nodeslist |
---|
1439 | myAttrs[ 'domain' ] = fqdn_parts( socket.getfqdn() )[1] |
---|
1440 | myAttrs[ 'poll_interval' ] = str( BATCH_POLL_INTERVAL ) |
---|
1441 | |
---|
1442 | if self.jobDataChanged( self.jobs, job_id, myAttrs ) and myAttrs['status'] in [ 'R', 'Q' ]: |
---|
1443 | |
---|
1444 | self.jobs[ job_id ] = myAttrs |
---|
1445 | |
---|
1446 | for id, attrs in self.jobs.items(): |
---|
1447 | |
---|
1448 | if id not in jobs_processed: |
---|
1449 | |
---|
1450 | # This one isn't there anymore; toedeledoki! |
---|
1451 | # |
---|
1452 | del self.jobs[ id ] |
---|
1453 | |
---|
1454 | # |
---|
1455 | # Gmetric by Nick Galbreath - nickg(a.t)modp(d.o.t)com |
---|
1456 | # Version 1.0 - 21-April2-2007 |
---|
1457 | # http://code.google.com/p/embeddedgmetric/ |
---|
1458 | # |
---|
1459 | # Modified by: Ramon Bastiaans |
---|
1460 | # For the Job Monarch Project, see: https://subtrac.sara.nl/oss/jobmonarch/ |
---|
1461 | # |
---|
1462 | # added: DEFAULT_TYPE for Gmetric's |
---|
1463 | # added: checkHostProtocol to determine if target is multicast or not |
---|
1464 | # changed: allow default for Gmetric constructor |
---|
1465 | # changed: allow defaults for all send() values except dmax |
---|
1466 | # |
---|
1467 | |
---|
1468 | GMETRIC_DEFAULT_TYPE = 'string' |
---|
1469 | GMETRIC_DEFAULT_HOST = '127.0.0.1' |
---|
1470 | GMETRIC_DEFAULT_PORT = '8649' |
---|
1471 | GMETRIC_DEFAULT_UNITS = '' |
---|
1472 | |
---|
1473 | class Gmetric: |
---|
1474 | |
---|
1475 | global GMETRIC_DEFAULT_HOST, GMETRIC_DEFAULT_PORT |
---|
1476 | |
---|
1477 | slope = { 'zero' : 0, 'positive' : 1, 'negative' : 2, 'both' : 3, 'unspecified' : 4 } |
---|
1478 | type = ( '', 'string', 'uint16', 'int16', 'uint32', 'int32', 'float', 'double', 'timestamp' ) |
---|
1479 | protocol = ( 'udp', 'multicast' ) |
---|
1480 | |
---|
1481 | def __init__( self, host=GMETRIC_DEFAULT_HOST, port=GMETRIC_DEFAULT_PORT ): |
---|
1482 | |
---|
1483 | global GMETRIC_DEFAULT_TYPE |
---|
1484 | |
---|
1485 | self.prot = self.checkHostProtocol( host ) |
---|
1486 | self.msg = xdrlib.Packer() |
---|
1487 | self.socket = socket.socket( socket.AF_INET, socket.SOCK_DGRAM ) |
---|
1488 | |
---|
1489 | if self.prot not in self.protocol: |
---|
1490 | |
---|
1491 | raise ValueError( "Protocol must be one of: " + str( self.protocol ) ) |
---|
1492 | |
---|
1493 | if self.prot == 'multicast': |
---|
1494 | |
---|
1495 | # Set multicast options |
---|
1496 | # |
---|
1497 | self.socket.setsockopt( socket.IPPROTO_IP, socket.IP_MULTICAST_TTL, 20 ) |
---|
1498 | |
---|
1499 | self.hostport = ( host, int( port ) ) |
---|
1500 | self.slopestr = 'both' |
---|
1501 | self.tmax = 60 |
---|
1502 | |
---|
1503 | def checkHostProtocol( self, ip ): |
---|
1504 | |
---|
1505 | """Detect if a ip adress is a multicast address""" |
---|
1506 | |
---|
1507 | MULTICAST_ADDRESS_MIN = ( "224", "0", "0", "0" ) |
---|
1508 | MULTICAST_ADDRESS_MAX = ( "239", "255", "255", "255" ) |
---|
1509 | |
---|
1510 | ip_fields = ip.split( '.' ) |
---|
1511 | |
---|
1512 | if ip_fields >= MULTICAST_ADDRESS_MIN and ip_fields <= MULTICAST_ADDRESS_MAX: |
---|
1513 | |
---|
1514 | return 'multicast' |
---|
1515 | else: |
---|
1516 | return 'udp' |
---|
1517 | |
---|
1518 | def send( self, name, value, dmax, typestr = '', units = '' ): |
---|
1519 | |
---|
1520 | if len( units ) == 0: |
---|
1521 | units = GMETRIC_DEFAULT_UNITS |
---|
1522 | |
---|
1523 | if len( typestr ) == 0: |
---|
1524 | typestr = GMETRIC_DEFAULT_TYPE |
---|
1525 | |
---|
1526 | msg = self.makexdr( name, value, typestr, units, self.slopestr, self.tmax, dmax ) |
---|
1527 | |
---|
1528 | return self.socket.sendto( msg, self.hostport ) |
---|
1529 | |
---|
1530 | def makexdr( self, name, value, typestr, unitstr, slopestr, tmax, dmax ): |
---|
1531 | |
---|
1532 | if slopestr not in self.slope: |
---|
1533 | |
---|
1534 | raise ValueError( "Slope must be one of: " + str( self.slope.keys() ) ) |
---|
1535 | |
---|
1536 | if typestr not in self.type: |
---|
1537 | |
---|
1538 | raise ValueError( "Type must be one of: " + str( self.type ) ) |
---|
1539 | |
---|
1540 | if len( name ) == 0: |
---|
1541 | |
---|
1542 | raise ValueError( "Name must be non-empty" ) |
---|
1543 | |
---|
1544 | self.msg.reset() |
---|
1545 | self.msg.pack_int( 0 ) |
---|
1546 | self.msg.pack_string( typestr ) |
---|
1547 | self.msg.pack_string( name ) |
---|
1548 | self.msg.pack_string( str( value ) ) |
---|
1549 | self.msg.pack_string( unitstr ) |
---|
1550 | self.msg.pack_int( self.slope[ slopestr ] ) |
---|
1551 | self.msg.pack_uint( int( tmax ) ) |
---|
1552 | self.msg.pack_uint( int( dmax ) ) |
---|
1553 | |
---|
1554 | return self.msg.get_buffer() |
---|
1555 | |
---|
1556 | def printTime( ): |
---|
1557 | |
---|
1558 | """Print current time/date in human readable format for log/debug""" |
---|
1559 | |
---|
1560 | return time.strftime("%a, %d %b %Y %H:%M:%S") |
---|
1561 | |
---|
1562 | def debug_msg( level, msg ): |
---|
1563 | |
---|
1564 | """Print msg if at or above current debug level""" |
---|
1565 | |
---|
1566 | global DAEMONIZE, DEBUG_LEVEL, SYSLOG_LEVEL |
---|
1567 | |
---|
1568 | if (not DAEMONIZE and DEBUG_LEVEL >= level): |
---|
1569 | sys.stderr.write( msg + '\n' ) |
---|
1570 | |
---|
1571 | if (DAEMONIZE and USE_SYSLOG and SYSLOG_LEVEL >= level): |
---|
1572 | syslog.syslog( msg ) |
---|
1573 | |
---|
1574 | def write_pidfile(): |
---|
1575 | |
---|
1576 | # Write pidfile if PIDFILE is set |
---|
1577 | # |
---|
1578 | if PIDFILE: |
---|
1579 | |
---|
1580 | pid = os.getpid() |
---|
1581 | |
---|
1582 | pidfile = open( PIDFILE, 'w' ) |
---|
1583 | |
---|
1584 | pidfile.write( str( pid ) ) |
---|
1585 | pidfile.close() |
---|
1586 | |
---|
1587 | def main(): |
---|
1588 | |
---|
1589 | """Application start""" |
---|
1590 | |
---|
1591 | global PBSQuery, PBSError, lsfObject |
---|
1592 | global SYSLOG_FACILITY, USE_SYSLOG, BATCH_API, DAEMONIZE |
---|
1593 | |
---|
1594 | if not processArgs( sys.argv[1:] ): |
---|
1595 | |
---|
1596 | sys.exit( 1 ) |
---|
1597 | |
---|
1598 | # Load appropriate DataGatherer depending on which BATCH_API is set |
---|
1599 | # and any required modules for the Gatherer |
---|
1600 | # |
---|
1601 | if BATCH_API == 'pbs': |
---|
1602 | |
---|
1603 | try: |
---|
1604 | from PBSQuery import PBSQuery, PBSError |
---|
1605 | |
---|
1606 | except ImportError: |
---|
1607 | |
---|
1608 | debug_msg( 0, "FATAL ERROR: BATCH_API set to 'pbs' but python module 'pbs_python' is not installed" ) |
---|
1609 | sys.exit( 1 ) |
---|
1610 | |
---|
1611 | gather = PbsDataGatherer() |
---|
1612 | |
---|
1613 | elif BATCH_API == 'sge': |
---|
1614 | |
---|
1615 | # Tested with SGE 6.0u11. |
---|
1616 | # |
---|
1617 | gather = SgeDataGatherer() |
---|
1618 | |
---|
1619 | elif BATCH_API == 'lsf': |
---|
1620 | |
---|
1621 | try: |
---|
1622 | from lsfObject import lsfObject |
---|
1623 | except: |
---|
1624 | debug_msg(0, "fatal error: BATCH_API set to 'lsf' but python module is not found or installed") |
---|
1625 | sys.exit( 1) |
---|
1626 | |
---|
1627 | gather = LsfDataGatherer() |
---|
1628 | |
---|
1629 | else: |
---|
1630 | debug_msg( 0, "FATAL ERROR: unknown BATCH_API '" + BATCH_API + "' is not supported" ) |
---|
1631 | |
---|
1632 | sys.exit( 1 ) |
---|
1633 | |
---|
1634 | if( DAEMONIZE and USE_SYSLOG ): |
---|
1635 | |
---|
1636 | syslog.openlog( 'jobmond', syslog.LOG_NOWAIT, SYSLOG_FACILITY ) |
---|
1637 | |
---|
1638 | if DAEMONIZE: |
---|
1639 | |
---|
1640 | gather.daemon() |
---|
1641 | else: |
---|
1642 | gather.run() |
---|
1643 | |
---|
1644 | # wh00t? someone started me! :) |
---|
1645 | # |
---|
1646 | if __name__ == '__main__': |
---|
1647 | main() |
---|