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Ticket Resolution Summary Owner Reporter
#37 fixed docdir is hardcoded in Makefile.in bas anonymous
Description

The docdir setting is hardcoded in the Makefile.in file, making it hard to change this, e.g. when you are installing this in a prefix.

attached a patch that fixes this.

#39 fixed Unable to build debian package bas dennis
Description

I tried to build the Debian package for version 4.4.0 but it fails:

creating /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python/usr
creating /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python/usr/lib
creating /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python/usr/lib/python2.7
creating /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python/usr/lib/python2.7/site-packages
creating /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python/usr/lib/python2.7/site-packages/pbs
copying build/lib.linux-x86_64-2.7/pbs.py -> /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python///usr/lib/python2.7/site-packages/pbs
copying build/lib.linux-x86_64-2.7/PBSQuery.py -> /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python///usr/lib/python2.7/site-packages/pbs
copying build/lib.linux-x86_64-2.7/_pbs.so -> /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python///usr/lib/python2.7/site-packages/pbs
byte-compiling /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python///usr/lib/python2.7/site-packages/pbs/pbs.py to pbs.pyc
byte-compiling /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python///usr/lib/python2.7/site-packages/pbs/PBSQuery.py to PBSQuery.pyc
running install_egg_info
Writing /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python///usr/lib/python2.7/site-packages/pbs/pbs_python-4.4.0-py2.7.egg-info
creating /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python///usr/lib/python2.7/site-packages/pbs.pth
install -D LICENSE.openpbs /var/tmp/dennis/pbs_python-4.4.0/debian/pbs-python///share/doc/ /LICENSE.openpbs
install: target `/LICENSE.openpbs' is not a directory
make[1]: *** [install] Error 1
make[1]: Leaving directory `/var/tmp/dennis/pbs_python-4.4.0'
make: *** [debian/stamp-makefile-install] Error 2

This line tries to use the ${PACKAGE} variable. But is is not set.

DOCDIR=${prefix}/share/doc/${PACKAGE}
#40 wontfix pbs_python compilation error message bas vipin@…
Description
Hi pbs_python team,

I am trying to compile pbs_python module locally (not the system-wide
distribution), downloaded a recent stable version pbs_python-4.4.0.

In my side I am using, RHEL Linux local 2.6.32-279.14.1.el6.x86_64,
python 2.6 and torque version 4.2.5.
The configure step gives me a warning message, I think that looks ok.

*pbs_python/pbs_python-4.4.0$ ./configure --prefix=/share/software/*
checking for pbs-config... /opt/torque/bin//pbs-config
Found torque version: 4.2.5
checking for python... /usr/bin/python
checking for python version... 2.6
checking for python platform... linux2
checking for python script directory...
${prefix}/lib/python2.6/site-packages
checking for python extension module directory...
${exec_prefix}/lib64/python2.6/site-packages
configure: creating ./config.status
config.status: creating Makefile
config.status: WARNING:  'Makefile.in' seems to ignore the --datarootdir
setting
config.status: creating setup.py

Next I went to provide "make" command and which throws me an error
message as follows:

pbs_python/pbs_python-4.4.0$ make
#(cd src; make)
python setup.py build
Failed to find log.h in inlcude dir /opt/torque/include/. (Set incude
dir via PBS_PYTHON_INCLUDEDIR variable)
make: *** [pythonlib] Error 2

I have set the env PBS_PYTHON_INCLUDEDIR to /opt/torque/include/ where
my torque include files. I haven't seen the log.h file in that path but
I can see /opt/torque/include/log_event.h /opt/torque/include/pbs_log.h

With the /opt/torque/include/pbs_log.h file I updated the setup.py file
and run the "make" command, this time it was successful.

*pbs_python/pbs_python-4.4.0$ make *
#(cd src; make)
python setup.py build
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.6
copying src/pbs.py -> build/lib.linux-x86_64-2.6
copying src/PBSQuery.py -> build/lib.linux-x86_64-2.6
running build_ext
building '_pbs' extension
creating build/temp.linux-x86_64-2.6
creating build/temp.linux-x86_64-2.6/src
creating build/temp.linux-x86_64-2.6/src/C++
g++ -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
-mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC
-fwrapv -I/opt/torque/include/ -fPIC -DTORQUE_4 -I/usr/include/python2.6
-c src/C++/pbs_wrap.cxx -o build/temp.linux-x86_64-2.6/src/C++/pbs_wrap.o
g++ -pthread -shared -I/opt/torque/include/
build/temp.linux-x86_64-2.6/src/C++/pbs_wrap.o -L/opt/torque/lib
-L/usr/lib64 -ltorque -lpython2.6 -o build/lib.linux-x86_64-2.6/_pbs.so
-L/opt/torque/lib -ltorque -Wl,-rpath -Wl,/opt/torque/lib

then I proceed further and gave make install command

*/pbs_python/pbs_python-4.4.0$ make install*
#(cd src; make)
python setup.py build
running build
running build_py
running build_ext
python ./setup.py install --prefix //share/software ;
running install
running build
running build_py
running build_ext
running install_lib
creating //share/software/lib64/python2.6/site-packages/pbs
copying build/lib.linux-x86_64-2.6/pbs.py ->
//share/software/lib64/python2.6/site-packages/pbs
copying build/lib.linux-x86_64-2.6/PBSQuery.py ->
//share/software/lib64/python2.6/site-packages/pbs
copying build/lib.linux-x86_64-2.6/_pbs.so ->
//share/software/lib64/python2.6/site-packages/pbs
byte-compiling //share/software/lib64/python2.6/site-packages/pbs/pbs.py
to pbs.pyc
byte-compiling
//share/software/lib64/python2.6/site-packages/pbs/PBSQuery.py to
PBSQuery.pyc
running install_egg_info
Writing
//share/software/lib64/python2.6/site-packages/pbs/pbs_python-4.4.0-py2.6
.egg-info
creating //share/software/lib64/python2.6/site-packages/pbs.pth
install -D LICENSE.openpbs //share/doc/ /LICENSE.openpbs
install: target `/LICENSE.openpbs' is not a directory
make: *** [install] Error 1

By looking at the Makefile, I have fixed manually the install -D steps,
which I believe the Makefile was not able to get the right path from the
defined variables. Of course they are not going to effect much in the
core installation of pbs_python, because the steps
consists of mainly the licenses and example scripts. The pbs_python
installation was successful and I tried to use the "pbs" module and
which was not working and throwing me an error message.

*In [1]: import pbs*
---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)

/home/vipin/codebase/TaskManager/<ipython console> in <module>()

/share/software/lib64/python2.6/site-packages/pbs/pbs.py in <module>()
      24                 fp.close()
      25             return _mod
---> 26     _pbs = swig_import_helper()
      27     del swig_import_helper
      28 else:

/share/software/lib64/python2.6/site-packages/pbs/pbs.py in
swig_import_helper()
      20         if fp is not None:
      21             try:
---> 22                 _mod = imp.load_module('_pbs', fp, pathname,
description)
      23             finally:
      24                 fp.close()

ImportError: /share/software/lib64/python2.6/site-packages/pbs/_pbs.so:
undefined symbol: _Z13log_availablei

I have also checked the files associated with the shared object _pbs.so,
which looks everything fine as here

*pbs_python/pbs_python-4.4.0$ ldd
/share/software/lib64/python2.6/site-packages/pbs/_pbs.so*
         linux-vdso.so.1 =>  (0x00007fff1fff0000)
         libtorque.so.2 => /opt/torque/lib64/libtorque.so.2
(0x00007f18b85aa000)
         libpython2.6.so.1.0 => /usr/lib64/libpython2.6.so.1.0
(0x00007f18b8203000)
         libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00007f18b7efd000)
         libm.so.6 => /lib64/libm.so.6 (0x00007f18b7c79000)
         libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f18b7a62000)
         libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f18b7845000)
         libc.so.6 => /lib64/libc.so.6 (0x00007f18b74b2000)
         libxml2.so.2 => /usr/lib64/libxml2.so.2 (0x00007f18b715f000)
         libz.so.1 => /lib64/libz.so.1 (0x00007f18b6f49000)
         libcrypto.so.10 => /usr/lib64/libcrypto.so.10 (0x00007f18b6baf000)
         libssl.so.10 => /usr/lib64/libssl.so.10 (0x00007f18b6951000)
         librt.so.1 => /lib64/librt.so.1 (0x00007f18b6749000)
         libdl.so.2 => /lib64/libdl.so.2 (0x00007f18b6545000)
         libutil.so.1 => /lib64/libutil.so.1 (0x00007f18b6341000)
         /lib64/ld-linux-x86-64.so.2 (0x000000306f000000)
         libgssapi_krb5.so.2 => /lib64/libgssapi_krb5.so.2
(0x00007f18b60fd000)
         libkrb5.so.3 => /lib64/libkrb5.so.3 (0x00007f18b5e16000)
         libcom_err.so.2 => /lib64/libcom_err.so.2 (0x00007f18b5c12000)
         libk5crypto.so.3 => /lib64/libk5crypto.so.3 (0x00007f18b59e6000)
         libkrb5support.so.0 => /lib64/libkrb5support.so.0
(0x00007f18b57da000)
         libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x00007f18b55d7000)
         libresolv.so.2 => /lib64/libresolv.so.2 (0x00007f18b53bd000)
         libselinux.so.1 => /lib64/libselinux.so.1 (0x00007f18b519d000)

Is there anything you can help the situation with me, I am happy to
provide more details from my side. I don't know if I am missing
to put the libs to be the last args at the end of the g++ command line
in make step?

many thanks in advance for the module,
Vipin
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