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Hi, i am a beginner in torque PBS and i am trying to implement a web application which will provide access in some of the torque abilities through a graphical web ui made in django. (eg: qsub, qstat, qhold, qdel commands and some general information about the system like number of nodes used etc) So in order to use this python library, i had to install torque in my pc and then pbs_python-4.4.0 and everything is ok. My question is: what should i do, to make use of the same tools in a remote grid system which has only torque PBS installed. I have access in that system from terminal through ssh, with my credentials. Is there any possibility for remote access in that system using PBS_PYTHON? Should i install pbs_python-4.4.0 and django in that system making it host of my web application? Thanks in advance.

We are using torque 5.0.0, so I downloaded the latest stable pbs_python version (4.4.0). I am having problems with the make portion of pbs_python (4.4.0) with torque (5.0.0).

-bash-3.2$ ./configure checking for pbs-config... /usr/local/torque/5.0.0/bin/pbs-config Found torque version: 5.0.0 checking for python... /usr/bin/python checking for python version... 2.4 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.4/site-packages checking for python extension module directory... ${exec_prefix}/lib64/python2.4/site-packages configure: creating ./config.status config.status: creating Makefile config.status: WARNING: 'Makefile.in' seems to ignore the --datarootdir setting config.status: creating setup.py

-bash-3.2$ make #(cd src; make) python setup.py build running build running build_py creating build creating build/lib.linux-x86_64-2.4 copying src/pbs.py -> build/lib.linux-x86_64-2.4 copying src/PBSQuery.py -> build/lib.linux-x86_64-2.4 running build_ext building '_pbs' extension creating build/temp.linux-x86_64-2.4 creating build/temp.linux-x86_64-2.4/src creating build/temp.linux-x86_64-2.4/src/C++ g++ -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -I/usr/local/torque/5.0.0/include -fPIC -DTORQUE_4 -I/usr/include/python2.4 -c src/C++/pbs_wrap.cxx -o build/temp.linux-x86_64-2.4/src/C++/pbs_wrap.o In file included from src/C++/pbs_ifl.h:90,

from src/C++/pbs_wrap.cxx:2978:

/usr/local/torque/5.0.0/include/u_hash_map_structs.h:82:25: error: container.hpp: No such file or directory In file included from src/C++/pbs_wrap.cxx:2978: src/C++/pbs_ifl.h:91:22: error: u_memmgr.h: No such file or directory /usr/local/torque/5.0.0/include/u_hash_map_structs.h:105: error: ‘string’ in namespace ‘std’ does not name a type /usr/local/torque/5.0.0/include/u_hash_map_structs.h:106: error: ‘string’ in namespace ‘std’ does not name a type /usr/local/torque/5.0.0/include/u_hash_map_structs.h: In constructor ‘job_data::job_data(const char*, const char*, int, int)’: /usr/local/torque/5.0.0/include/u_hash_map_structs.h:115: error: ‘name’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:116: error: ‘value’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h: At global scope: /usr/local/torque/5.0.0/include/u_hash_map_structs.h:120: error: ‘container’ has not been declared /usr/local/torque/5.0.0/include/u_hash_map_structs.h:120: error: expected initializer before ‘<’ token /usr/local/torque/5.0.0/include/u_hash_map_structs.h:121: error: ‘job_data_container’ has not been declared /usr/local/torque/5.0.0/include/u_hash_map_structs.h:121: error: expected initializer before ‘job_data_iterator’ /usr/local/torque/5.0.0/include/u_hash_map_structs.h:123: error: ‘job_data_container’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:123: error: ‘head’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:123: error: expected primary-expression before ‘const’ /usr/local/torque/5.0.0/include/u_hash_map_structs.h:123: error: expected primary-expression before ‘const’ /usr/local/torque/5.0.0/include/u_hash_map_structs.h:123: error: expected primary-expression before ‘int’ /usr/local/torque/5.0.0/include/u_hash_map_structs.h:123: error: expected primary-expression before ‘int’ /usr/local/torque/5.0.0/include/u_hash_map_structs.h:123: error: initializer expression list treated as compound expression /usr/local/torque/5.0.0/include/u_hash_map_structs.h:125: error: variable or field ‘hash_add_or_exit’ declared void /usr/local/torque/5.0.0/include/u_hash_map_structs.h:125: error: ‘job_data_container’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:125: error: ‘head’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:125: error: expected primary-expression before ‘const’ /usr/local/torque/5.0.0/include/u_hash_map_structs.h:125: error: expected primary-expression before ‘const’ /usr/local/torque/5.0.0/include/u_hash_map_structs.h:125: error: expected primary-expression before ‘int’ /usr/local/torque/5.0.0/include/u_hash_map_structs.h:125: error: initializer expression list treated as compound expression /usr/local/torque/5.0.0/include/u_hash_map_structs.h:127: error: ‘job_data_container’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:127: error: ‘head’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:127: error: expected primary-expression before ‘const’ /usr/local/torque/5.0.0/include/u_hash_map_structs.h:127: error: initializer expression list treated as compound expression /usr/local/torque/5.0.0/include/u_hash_map_structs.h:129: error: ‘job_data_container’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:129: error: ‘head’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:131: error: ‘job_data_container’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:131: error: ‘head’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:131: error: expected primary-expression before ‘const’ /usr/local/torque/5.0.0/include/u_hash_map_structs.h:131: error: expected primary-expression before ‘*’ token /usr/local/torque/5.0.0/include/u_hash_map_structs.h:131: error: ‘env_var’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:131: error: initializer expression list treated as compound expression /usr/local/torque/5.0.0/include/u_hash_map_structs.h:133: error: ‘job_data_container’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:133: error: ‘head’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:135: error: ‘job_data_container’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:135: error: ‘head’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:137: error: ‘job_data_container’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:137: error: ‘dest’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:137: error: ‘job_data_container’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:137: error: ‘src’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:137: error: expected primary-expression before ‘int’ /usr/local/torque/5.0.0/include/u_hash_map_structs.h:137: error: initializer expression list treated as compound expression /usr/local/torque/5.0.0/include/u_hash_map_structs.h:139: error: ‘job_data_container’ was not declared in this scope /usr/local/torque/5.0.0/include/u_hash_map_structs.h:139: error: ‘src’ was not declared in this scope src/C++/pbs_ifl.h:658: error: ‘memmgr’ has not been declared src/C++/pbs_wrap.cxx: In function ‘PyObject?* _wrap_pbs_submit_hash(PyObject?*, PyObject?*)’: src/C++/pbs_wrap.cxx:7178: error: ‘memmgr’ was not declared in this scope src/C++/pbs_wrap.cxx:7178: error: ‘arg2’ was not declared in this scope src/C++/pbs_wrap.cxx:7178: error: expected primary-expression before ‘)’ token src/C++/pbs_wrap.cxx:7178: error: expected `;' before numeric constant src/C++/pbs_wrap.cxx:7228: error: expected primary-expression before ‘)’ token src/C++/pbs_wrap.cxx: At global scope: src/C++/pbs_wrap.cxx:893: warning: ‘long int PyNumber_AsSsize_t(PyObject?*, void*)’ defined but not used error: command 'g++' failed with exit status 1 make: * [pythonlib] Error 1

As a sanity check I built pbs_python (4.4.0) against an older version of torque (4.2.7), and the build succeeds. Has anyone tested the newest stable pbs_python against torque version 5.0.x? I know that the 5.0.x torque series is new.

Thank you.

Hi,

I have compiled pbs_python-4.4.0 using gcc compiler and install it at the default path. We are using:

# qsub --version Version: 4.2.8

and python 2.7.4. However, when I run the following simple python program:

import pbs

server_name = pbs.pbs_default() print "Server name",server_name c = pbs.pbs_connect(server_name)

attropl = pbs.new_attropl(1)

# Set the name of the job # attropl[0].name = pbs.ATTR_N attropl[0].value = 'test'

#

job_id = pbs.pbs_submit(c, attropl, "A1.tsk", 'default', 'NULL')

e, e_txt = pbs.error() if e:

print e,e_txt

print job_id

# python submission.py Server name b0 constructor called 15044 Resources temporarily unavailable None

qsub is in default searching path and it works in our cluster from above command line.

Any suggestion would be highly appreciated.

Cheers, Ata

Ata Roudgar Research Computing WestGrid? Site IT Services Simon Fraser University Burnaby, British Columbia Canada V5A 1S6

phone: 778 782-8860 fax: 778 782-4242